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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033705 through 18771 annotations produced 1 hits



(CG13168):

Annotation Number : CG13168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033705
Gbrowse : chr2R:8141496-8143197 (+) // 100.0 //
Probeset : 1638334_at
Accessions : protein= NP_995822; /// NP_995823;, nucleotide= NM_206100; /// NM_206101;
FlyMine data for FBgn0033705.
BioGrid reports that CG13168 interacts with CG15423 CG15549 CG15578 CG15636 CG15919 .
VDRC has 2 RNAi stocks for FBgn0033705 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 02 of 4 0.20Down
Head6 ± 10 of 4 0.10Down
Eye9 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.10Down
Salivary gland4 ± 20 of 4 0.07Down
Crop8 ± 10 of 4 0.10Down
Midgut7 ± 00 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut4 ± 11 of 4 0.10Down
Heart4 ± 00 of 4 0.07Down
Fat body6 ± 00 of 4 0.10Down
Ovary1 ± 00 of 4 0.00Down
Testis865 ± 324 of 413.60Up
Male accessory glands9 ± 10 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.07Down
Mated spermatheca4 ± 10 of 4 0.06Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.06Down
Larval Salivary gland4 ± 10 of 4 0.06Down
Larval midgut2 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.05Down
Larval fat body120 ± 664 of 4 1.90None
Larval trachea5 ± 71 of 4 0.08Down
Larval carcass7 ± 20 of 4 0.11Down
S2 cells (growing)4 ± 01 of 4 0.06Down
Whole fly63 ± 34 of 4

Looking for FBgn0033705. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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