FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033708 through 18771 annotations produced 1 hits

(CG8850):

Annotation Number : CG8850
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033708
Gbrowse : chr2R:8186282-8189741 (-) // 100.0 //
Probeset : 1639830_s_at
Accessions : protein= NP_610755; /// NP_725122;, nucleotide= NM_136911; /// NM_165871;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0033708.
BDGP gene expression has embryonic in situ data for CG8850: 12 pix of staining in 2 body parts.
Homophila reports that CG8850 is a close match (2e-64) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 1 RNAi stocks for FBgn0033708 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	2.00	None
Head	5 ± 0	0 of 4	2.40	Up
Eye	2 ± 0	0 of 4	1.20	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.10	None
Salivary gland	6 ± 2	0 of 4	2.61	None
Crop	3 ± 1	0 of 4	1.40	None
Midgut	3 ± 0	0 of 4	1.60	None
Tubule	5 ± 1	0 of 4	2.10	Up
Hindgut	2 ± 1	0 of 4	1.00	None
Heart	1 ± 0	0 of 4	0.77	None
Fat body	8 ± 6	1 of 4	3.43	None
Ovary	2 ± 0	0 of 4	0.80	None
Testis	5 ± 0	0 of 4	2.10	None
Male accessory glands	10 ± 1	0 of 4	4.30	Up
Virgin spermatheca	2 ± 0	0 of 4	1.02	None
Mated spermatheca	6 ± 2	1 of 4	2.48	None
Adult carcass	8 ± 3	0 of 4	3.40	None
Larval CNS	2 ± 2	0 of 4	0.99	None
Larval Salivary gland	4 ± 2	0 of 4	1.81	None
Larval midgut	1 ± 0	0 of 4	0.73	None
Larval tubule	741 ± 72	4 of 4	305.70	Up
Larval hindgut	1 ± 1	0 of 4	0.69	None
Larval fat body	844 ± 113	4 of 4	348.20	Up
Larval trachea	4 ± 3	0 of 4	1.97	None
Larval carcass	92 ± 17	4 of 4	38.08	Up
S2 cells (growing)	3 ± 0	0 of 4	1.46	None
Whole fly	2 ± 1	0 of 4

Looking for FBgn0033708. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720