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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033710 through 18771 annotations produced 1 hits

fat-spondin (CG17739):

Annotation Number : CG17739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033710
Gbrowse : chr2R:8194028-8197917 (+) // 100.0 //
Probeset : 1635807_at
Accessions : protein= NP_610757;, nucleotide= NM_136913;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0033710.
BDGP gene expression has embryonic in situ data for CG17739: 6 pix of staining in 2 body parts.
BioGrid reports that CG17739 interacts with CG2059 CG6130 CG8717 CG6081 CG6222 CG7354 CG7590 Dmel CG34407 .
TRiP has 1 RNAi stocks for FBgn0033710 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033710 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain305 64 of 4 2.20Up
Head1047 364 of 4 7.40Up
Eye3781 524 of 426.67Up
Thoracicoabdominal ganglion588 214 of 4 4.20Up
Salivary gland14 20 of 4 0.10Down
Crop33 33 of 4 0.20Down
Midgut14 10 of 4 0.10Down
Tubule9 10 of 4 0.10Down
Hindgut28 23 of 4 0.20Down
Heart428 154 of 4 3.02Up
Fat body379 14 of 4 2.68Up
Ovary2 00 of 4 0.00Down
Testis43 24 of 4 0.30Down
Male accessory glands112 34 of 4 0.80Down
Virgin spermatheca246 144 of 4 1.74Up
Mated spermatheca316 154 of 4 2.23Up
Adult carcass301 84 of 4 2.10Up
Larval CNS167 214 of 4 1.18None
Larval Salivary gland7 20 of 4 0.06Down
Larval midgut10 10 of 4 0.07Down
Larval tubule43 24 of 4 0.30Down
Larval hindgut6 10 of 4 0.04Down
Larval fat body179 274 of 4 1.30None
Larval trachea100 1124 of 4 0.71None
Larval carcass7 00 of 4 0.05Down
S2 cells (growing)3 10 of 4 0.03Down
Whole fly141 64 of 4

Looking for FBgn0033710. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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