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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033715 through 18771 annotations produced 1 hits



(CG8490):

Annotation Number : CG8490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033715
Gbrowse : chr2R:8222853-8223710 (+) // 100.0 //
Probeset : 1635687_at
Accessions : protein= NP_001163125; /// NP_610762;, nucleotide= NM_001169654; /// NM_136918;
FlyMine data for FBgn0033715.
BDGP gene expression has embryonic in situ data for CG8490: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033715 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 ± 34 of 4 0.80Down
Head35 ± 23 of 4 0.30Down
Eye38 ± 34 of 4 0.38Down
Thoracicoabdominal ganglion62 ± 14 of 4 0.60Down
Salivary gland35 ± 30 of 4 0.36Down
Crop34 ± 11 of 4 0.30Down
Midgut24 ± 31 of 4 0.20Down
Tubule45 ± 34 of 4 0.50Down
Hindgut36 ± 10 of 4 0.40Down
Heart52 ± 34 of 4 0.52Down
Fat body52 ± 94 of 4 0.53Down
Ovary197 ± 74 of 4 2.00Up
Testis35 ± 14 of 4 0.40Down
Male accessory glands44 ± 40 of 4 0.40Down
Virgin spermatheca21 ± 20 of 4 0.21Down
Mated spermatheca26 ± 21 of 4 0.26Down
Adult carcass44 ± 30 of 4 0.40Down
Larval CNS145 ± 114 of 4 1.46Up
Larval Salivary gland53 ± 34 of 4 0.54Down
Larval midgut55 ± 24 of 4 0.55Down
Larval tubule116 ± 104 of 4 1.20None
Larval hindgut65 ± 34 of 4 0.65Down
Larval fat body62 ± 54 of 4 0.60Down
Larval trachea97 ± 124 of 4 0.98None
Larval carcass49 ± 31 of 4 0.49Down
S2 cells (growing)258 ± 174 of 4 2.59Up
Whole fly99 ± 34 of 4

Looking for FBgn0033715. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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