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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033716 through 18771 annotations produced 1 hits



CG8493 (Den1):

Annotation Number : CG8493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033716
Gbrowse : chr2R:8225306-8227050 (+) // 100.0 //
Probeset : 1638315_s_at
Accessions : protein= NP_001163126; /// NP_610763; /// NP_725135;, nucleotide= NM_001169655; /// NM_136919; /// NM_165882;
Interpro : 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity //
FlyMine data for FBgn0033716.
VDRC has 3 RNAi stocks for FBgn0033716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain255 ± 74 of 4 1.50Up
Head148 ± 54 of 4 0.90None
Eye254 ± 104 of 4 1.53Up
Thoracicoabdominal ganglion223 ± 84 of 4 1.30Up
Salivary gland231 ± 94 of 4 1.39Up
Crop195 ± 94 of 4 1.20None
Midgut82 ± 54 of 4 0.50Down
Tubule87 ± 54 of 4 0.50Down
Hindgut121 ± 54 of 4 0.70Down
Heart149 ± 44 of 4 0.90None
Fat body124 ± 84 of 4 0.75None
Ovary206 ± 54 of 4 1.20None
Testis504 ± 114 of 4 3.00Up
Male accessory glands135 ± 124 of 4 0.80None
Virgin spermatheca123 ± 34 of 4 0.74None
Mated spermatheca116 ± 44 of 4 0.70Down
Adult carcass150 ± 84 of 4 0.90None
Larval CNS256 ± 154 of 4 1.54Up
Larval Salivary gland167 ± 74 of 4 1.01None
Larval midgut82 ± 14 of 4 0.50Down
Larval tubule93 ± 34 of 4 0.60Down
Larval hindgut106 ± 84 of 4 0.64Down
Larval fat body187 ± 214 of 4 1.10None
Larval trachea179 ± 254 of 4 1.08None
Larval carcass148 ± 84 of 4 0.90None
S2 cells (growing)57 ± 34 of 4 0.34Down
Whole fly166 ± 144 of 4

Looking for FBgn0033716. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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