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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033717 through 18771 annotations produced 1 hits



(CG8839):

Annotation Number : CG8839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033717
Gbrowse : chr2R:8227114-8232118 (-) // 100.0 //
Probeset : 1637576_s_at
Accessions : protein= NP_610764; /// NP_725137; /// NP_725138; /// NP_725139;, nucleotide= NM_136920; /// NM_165884; /// NM_165885; /// NM_165886;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : "0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity
FlyMine data for FBgn0033717.
BDGP gene expression has embryonic in situ data for CG8839: 39 pix of staining in 9 body parts.
Homophila reports that CG8839 is a close match (9e-14) to human gene FAAH (NP_001432), a gene associated with {Drug addiction, susceptibility to} (3).
VDRC has 3 RNAi stocks for FBgn0033717 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 44 of 4 0.90None
Head320 194 of 4 1.30Up
Eye186 104 of 4 0.77None
Thoracicoabdominal ganglion241 64 of 4 1.00None
Salivary gland821 394 of 4 3.40Up
Crop529 94 of 4 2.20Up
Midgut771 154 of 4 3.20Up
Tubule1633 714 of 4 6.80Up
Hindgut1034 184 of 4 4.30Up
Heart466 354 of 4 1.93Up
Fat body302 554 of 4 1.25None
Ovary153 24 of 4 0.60Down
Testis161 34 of 4 0.70Down
Male accessory glands451 94 of 4 1.90Up
Virgin spermatheca291 194 of 4 1.20None
Mated spermatheca314 264 of 4 1.30None
Adult carcass350 334 of 4 1.40Up
Larval CNS572 804 of 4 2.37Up
Larval Salivary gland377 234 of 4 1.56Up
Larval midgut1224 354 of 4 5.06Up
Larval tubule4762 954 of 419.70Up
Larval hindgut1594 554 of 4 6.59Up
Larval fat body480 464 of 4 2.00Up
Larval trachea464 254 of 4 1.92Up
Larval carcass288 234 of 4 1.19None
S2 cells (growing)1196 204 of 4 4.95Up
Whole fly241 214 of 4

Looking for FBgn0033717. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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