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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033720 through 18771 annotations produced 1 hits



(CG13160):

Annotation Number : CG13160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033720
Gbrowse : chr2R:8259100-8262592 (+) // 99.82 //
Probeset : 1628460_at
Accessions : protein= NP_725145;, nucleotide= NM_165890;
Interpro : "0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0033720.
BDGP gene expression has embryonic in situ data for CG13160: 10 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0033720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10None
Head3 ± 10 of 4 0.30None
Eye1 ± 00 of 4 0.10None
Thoracicoabdominal ganglion2 ± 00 of 4 0.20None
Salivary gland3 ± 10 of 4 0.28None
Crop5 ± 20 of 4 0.40None
Midgut41 ± 30 of 4 3.50Up
Tubule91 ± 183 of 4 7.60Up
Hindgut201 ± 74 of 416.70Up
Heart1 ± 00 of 4 0.10None
Fat body3 ± 30 of 4 0.28None
Ovary1 ± 00 of 4 0.10None
Testis4 ± 00 of 4 0.30None
Male accessory glands2 ± 00 of 4 0.20None
Virgin spermatheca1 ± 00 of 4 0.13None
Mated spermatheca2 ± 10 of 4 0.18None
Adult carcass1 ± 00 of 4 0.10None
Larval CNS3 ± 00 of 4 0.32None
Larval Salivary gland0 ± 00 of 4 0.08None
Larval midgut565 ± 344 of 446.84Up
Larval tubule178 ± 124 of 414.80Up
Larval hindgut556 ± 654 of 446.10Up
Larval fat body1 ± 00 of 4 0.10None
Larval trachea3 ± 30 of 4 0.27None
Larval carcass9 ± 30 of 4 0.75None
S2 cells (growing)5 ± 10 of 4 0.42None
Whole fly12 ± 40 of 4

Looking for FBgn0033720. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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