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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033725 through 18771 annotations produced 1 hits



CG8502 (Cpr49Ac):

Annotation Number : CG8502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033725
Gbrowse : chr2R:8274483-8277564 (+) // 100.0 //
Probeset : 1631701_a_at
Accessions : protein= NP_001163127; /// NP_610772; /// NP_725150;, nucleotide= NM_001169656; /// NM_136928; /// NM_165892;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0033725.
BDGP gene expression has embryonic in situ data for CG8502: 38 pix of staining in 10 body parts.
BioGrid reports that CG8502 interacts with CG8697 .
VDRC has 2 RNAi stocks for FBgn0033725 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.70None
Head4 ± 20 of 4 1.30None
Eye3 ± 10 of 4 1.13None
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland4 ± 20 of 4 1.49None
Crop5 ± 20 of 4 1.80None
Midgut2 ± 10 of 4 0.80None
Tubule2 ± 00 of 4 0.90Down
Hindgut10 ± 12 of 4 3.40Up
Heart76 ± 354 of 423.66None
Fat body8 ± 10 of 4 2.56None
Ovary0 ± 00 of 4 0.20None
Testis6 ± 11 of 4 2.00None
Male accessory glands1 ± 00 of 4 0.60None
Virgin spermatheca7 ± 21 of 4 2.36None
Mated spermatheca6 ± 20 of 4 1.89None
Adult carcass4 ± 00 of 4 1.40None
Larval CNS8 ± 33 of 4 2.58None
Larval Salivary gland214 ± 264 of 466.64Up
Larval midgut11 ± 10 of 4 3.54Up
Larval tubule133 ± 304 of 441.40Up
Larval hindgut476 ± 2074 of 4147.88None
Larval fat body9337 ± 10084 of 42895.40Up
Larval trachea278 ± 2544 of 486.32None
Larval carcass4032 ± 5274 of 41250.50Up
S2 cells (growing)11 ± 14 of 4 3.62Up
Whole fly3 ± 11 of 4

Looking for FBgn0033725. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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