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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033725 through 18771 annotations produced 1 hits

CG8502 (Cpr49Ac):

Annotation Number : CG8502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033725
Gbrowse : chr2R:8274483-8277564 (+) // 100.0 //
Probeset : 1631701_a_at
Accessions : protein= NP_001163127; /// NP_610772; /// NP_725150;, nucleotide= NM_001169656; /// NM_136928; /// NM_165892;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0033725.
BDGP gene expression has embryonic in situ data for CG8502: 38 pix of staining in 10 body parts.
BioGrid reports that CG8502 interacts with CG8697 .
VDRC has 2 RNAi stocks for FBgn0033725 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.70None
Head4 20 of 4 1.30None
Eye3 10 of 4 1.13None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland4 20 of 4 1.49None
Crop5 20 of 4 1.80None
Midgut2 10 of 4 0.80None
Tubule2 00 of 4 0.90Down
Hindgut10 12 of 4 3.40Up
Heart76 354 of 423.66None
Fat body8 10 of 4 2.56None
Ovary0 00 of 4 0.20None
Testis6 11 of 4 2.00None
Male accessory glands1 00 of 4 0.60None
Virgin spermatheca7 21 of 4 2.36None
Mated spermatheca6 20 of 4 1.89None
Adult carcass4 00 of 4 1.40None
Larval CNS8 33 of 4 2.58None
Larval Salivary gland214 264 of 466.64Up
Larval midgut11 10 of 4 3.54Up
Larval tubule133 304 of 441.40Up
Larval hindgut476 2074 of 4147.88None
Larval fat body9337 10084 of 42895.40Up
Larval trachea278 2544 of 486.32None
Larval carcass4032 5274 of 41250.50Up
S2 cells (growing)11 14 of 4 3.62Up
Whole fly3 11 of 4

Looking for FBgn0033725. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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