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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033727 through 18771 annotations produced 1 hits



Odorant receptor 49a (Or49a):

Annotation Number : CG13158
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033727
Gbrowse : chr2R:8280987-8282347 (+) // 100.0 //
Probeset : 1624430_at
Accessions : protein= NP_523711;, nucleotide= NM_078987;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0033727.
BioGrid reports that CG13158 interacts with CG17927 .
VDRC has 3 RNAi stocks for FBgn0033727 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.80None
Head4 11 of 4 1.60None
Eye0 00 of 4 0.24None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland10 30 of 4 4.08None
Crop3 10 of 4 1.30None
Midgut5 10 of 4 2.20None
Tubule2 00 of 4 0.90None
Hindgut4 00 of 4 1.60None
Heart1 00 of 4 0.50None
Fat body7 20 of 4 2.78Up
Ovary1 10 of 4 0.70None
Testis1 00 of 4 0.60None
Male accessory glands5 10 of 4 2.30None
Virgin spermatheca2 10 of 4 0.90None
Mated spermatheca1 00 of 4 0.64None
Adult carcass1 00 of 4 0.40None
Larval CNS1 00 of 4 0.67None
Larval Salivary gland2 10 of 4 1.02None
Larval midgut4 20 of 4 1.86None
Larval tubule6 20 of 4 2.60None
Larval hindgut2 00 of 4 0.90None
Larval fat body8 10 of 4 3.40Up
Larval trachea2 20 of 4 1.13None
Larval carcass2 00 of 4 0.93None
S2 cells (growing)3 10 of 4 1.28None
Whole fly2 11 of 4

Looking for FBgn0033727. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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