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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033729 through 18771 annotations produced 1 hits

CG8510 (Cpr49Af):

Annotation Number : CG8510
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033729
Gbrowse : chr2R:8293509-8293948 (+) // 100.0 //
Probeset : 1635331_at
Accessions : protein= NP_610775;, nucleotide= NM_136931;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0033729.
VDRC has 2 RNAi stocks for FBgn0033729 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 20 of 4 0.70None
Head44 44 of 4 9.60Up
Eye187 244 of 440.32Up
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland10 20 of 4 2.34None
Crop7 20 of 4 1.50None
Midgut2 00 of 4 0.50None
Tubule3 00 of 4 0.70Down
Hindgut1 00 of 4 0.40None
Heart0 00 of 4 0.10None
Fat body3 20 of 4 0.76None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.30None
Male accessory glands4 10 of 4 1.00None
Virgin spermatheca2 00 of 4 0.53None
Mated spermatheca1 00 of 4 0.33None
Adult carcass5 20 of 4 1.20None
Larval CNS2 20 of 4 0.61None
Larval Salivary gland3 10 of 4 0.78None
Larval midgut6 30 of 4 1.46None
Larval tubule1 00 of 4 0.40None
Larval hindgut174 374 of 437.42Up
Larval fat body2 00 of 4 0.40None
Larval trachea222 1464 of 447.87None
Larval carcass2850 2094 of 4613.02Up
S2 cells (growing)1 00 of 4 0.25None
Whole fly4 20 of 4

Looking for FBgn0033729. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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