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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033731 through 18771 annotations produced 1 hits



CG8515 (Cpr49Ah):

Annotation Number : CG8515
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033731
Gbrowse : chr2R:8301566-8302358 (+) // 100.0 //
Probeset : 1633647_at
Accessions : protein= NP_610777;, nucleotide= NM_136933;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0033731.
VDRC has 2 RNAi stocks for FBgn0033731 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head6 11 of 4 0.70None
Eye24 53 of 4 2.84None
Thoracicoabdominal ganglion2 10 of 4 0.30Down
Salivary gland13 10 of 4 1.48Up
Crop6 00 of 4 0.80None
Midgut5 21 of 4 0.70None
Tubule5 00 of 4 0.60Down
Hindgut4 00 of 4 0.50Down
Heart4 10 of 4 0.51None
Fat body7 20 of 4 0.87None
Ovary4 00 of 4 0.50Down
Testis2 00 of 4 0.30Down
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca2 11 of 4 0.32Down
Mated spermatheca5 00 of 4 0.66Down
Adult carcass10 10 of 4 1.20None
Larval CNS5 12 of 4 0.59Down
Larval Salivary gland7 21 of 4 0.82None
Larval midgut5 20 of 4 0.57None
Larval tubule3 10 of 4 0.40Down
Larval hindgut9 23 of 4 1.09None
Larval fat body8 01 of 4 0.90None
Larval trachea969 2514 of 4110.46Up
Larval carcass185 244 of 421.14Up
S2 cells (growing)7 01 of 4 0.80None
Whole fly8 02 of 4

Looking for FBgn0033731. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime