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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033736 through 18771 annotations produced 1 hits



(CG13154):

Annotation Number : CG13154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033736
Gbrowse : chr2R:8314386-8315366 (-) // 100.0 //
Probeset : 1623970_at
Accessions : protein= NP_610782;, nucleotide= NM_136938;
FlyMine data for FBgn0033736.
BDGP gene expression has embryonic in situ data for CG13154: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0033736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.70None
Head3 ± 10 of 4 0.50None
Eye2 ± 10 of 4 0.44None
Thoracicoabdominal ganglion5 ± 20 of 4 0.90None
Salivary gland5 ± 10 of 4 1.00None
Crop2 ± 10 of 4 0.50None
Midgut4 ± 20 of 4 0.80None
Tubule4 ± 10 of 4 0.80None
Hindgut4 ± 10 of 4 0.90None
Heart5 ± 10 of 4 0.96None
Fat body7 ± 20 of 4 1.33None
Ovary3 ± 10 of 4 0.50None
Testis6 ± 10 of 4 1.10None
Male accessory glands4 ± 20 of 4 0.80None
Virgin spermatheca4 ± 10 of 4 0.79None
Mated spermatheca6 ± 20 of 4 1.09None
Adult carcass13 ± 40 of 4 2.30None
Larval CNS3 ± 10 of 4 0.67Down
Larval Salivary gland10 ± 20 of 4 1.81None
Larval midgut8 ± 40 of 4 1.54None
Larval tubule2 ± 00 of 4 0.40Down
Larval hindgut4 ± 10 of 4 0.73None
Larval fat body3 ± 10 of 4 0.60None
Larval trachea3 ± 20 of 4 0.55None
Larval carcass3 ± 00 of 4 0.63None
S2 cells (growing)6 ± 10 of 4 1.24None
Whole fly5 ± 00 of 4

Looking for FBgn0033736. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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