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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033739 through 18771 annotations produced 1 hits



Dystrobrevin-like (Dyb):

Annotation Number : CG8529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033739
Gbrowse : chr2R:8324839-8340417 (+) // 100.0 //
Probeset : 1630118_s_at
Accessions : protein= NP_001027407; /// NP_001027408; /// NP_001097287; /// NP_523712; /// NP_725171; /// NP_725172;, nucleotide= NM_001032236; /// NM_001032237; /// NM_001103817; /// NM_078988; /// NM_165904; /// NM_165905;
Pathway : 0016010 // dystrophin-associated glycoprotein complex // inferred from sequence or structural similarity /// 0016014 //
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inf
FlyMine data for FBgn0033739.
Homophila reports that CG8529 is a close match (4e-21) to human gene D18S892E;DRP3;DTNA;LVNC1 (NP_116763), a gene associated with Left ventricular noncompaction with congenital heart defects, 606617 (3);Left ventricular noncompaction, familial isolated, 1, 604169 (3).
TRiP has 2 RNAi stocks for FBgn0033739 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033739 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain411 ± 74 of 4 7.30Up
Head146 ± 94 of 4 2.60Up
Eye241 ± 234 of 4 4.28Up
Thoracicoabdominal ganglion320 ± 94 of 4 5.70Up
Salivary gland211 ± 144 of 4 3.75Up
Crop378 ± 114 of 4 6.70Up
Midgut60 ± 34 of 4 1.10None
Tubule81 ± 74 of 4 1.40Up
Hindgut285 ± 114 of 4 5.10Up
Heart94 ± 54 of 4 1.67Up
Fat body65 ± 84 of 4 1.16None
Ovary58 ± 14 of 4 1.00None
Testis5 ± 14 of 4 0.10Down
Male accessory glands59 ± 44 of 4 1.00None
Virgin spermatheca74 ± 24 of 4 1.32Up
Mated spermatheca125 ± 94 of 4 2.21Up
Adult carcass52 ± 34 of 4 0.90None
Larval CNS190 ± 274 of 4 3.37Up
Larval Salivary gland69 ± 34 of 4 1.23Up
Larval midgut48 ± 54 of 4 0.86None
Larval tubule142 ± 44 of 4 2.50Up
Larval hindgut98 ± 64 of 4 1.75Up
Larval fat body39 ± 14 of 4 0.70Down
Larval trachea139 ± 224 of 4 2.47Up
Larval carcass104 ± 124 of 4 1.84Up
S2 cells (growing)27 ± 14 of 4 0.49Down
Whole fly56 ± 24 of 4

Looking for FBgn0033739. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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