FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033740 through 18771 annotations produced 1 hits

CG8828 (dgt5):

Annotation Number : CG8828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033740
Gbrowse : chr2R:8353182-8359280 (-) // 99.74 //
Probeset : 1641436_at
Accessions : protein= NP_610785;, nucleotide= NM_136941;
Pathway : 0005819 // spindle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from direct a
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0033740.
BDGP gene expression has embryonic in situ data for CG8828: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033740 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.10	Down
Head	9 ± 2	0 of 4	0.10	Down
Eye	17 ± 2	2 of 4	0.22	Down
Thoracicoabdominal ganglion	8 ± 1	0 of 4	0.10	Down
Salivary gland	2 ± 1	0 of 4	0.04	Down
Crop	5 ± 1	0 of 4	0.10	Down
Midgut	7 ± 2	0 of 4	0.10	Down
Tubule	3 ± 2	0 of 4	0.00	Down
Hindgut	5 ± 1	0 of 4	0.10	Down
Heart	10 ± 2	0 of 4	0.13	Down
Fat body	4 ± 5	0 of 4	0.06	Down
Ovary	228 ± 5	4 of 4	2.90	Up
Testis	29 ± 0	4 of 4	0.40	Down
Male accessory glands	2 ± 0	0 of 4	0.00	Down
Virgin spermatheca	4 ± 2	0 of 4	0.06	Down
Mated spermatheca	6 ± 2	0 of 4	0.09	Down
Adult carcass	7 ± 1	0 of 4	0.10	Down
Larval CNS	112 ± 4	4 of 4	1.43	Up
Larval Salivary gland	7 ± 1	0 of 4	0.09	Down
Larval midgut	2 ± 0	0 of 4	0.03	Down
Larval tubule	4 ± 1	0 of 4	0.10	Down
Larval hindgut	17 ± 1	4 of 4	0.23	Down
Larval fat body	14 ± 3	0 of 4	0.20	Down
Larval trachea	58 ± 4	4 of 4	0.74	Down
Larval carcass	17 ± 1	1 of 4	0.23	Down
S2 cells (growing)	151 ± 5	4 of 4	1.93	Up
Whole fly	78 ± 5	4 of 4

Looking for FBgn0033740. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720