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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033741 through 18771 annotations produced 1 hits



(CG8545):

Annotation Number : CG8545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033741
Gbrowse : chr2R:8356144-8359227 (+) // 100.0 //
Probeset : 1624750_at
Accessions : protein= NP_610786;, nucleotide= NM_136942;
Pathway : 0005730 // nucleolus // inferred from sequence or structural similarity
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from
FlyMine data for FBgn0033741.
BDGP gene expression has embryonic in situ data for CG8545: 15 pix of staining in 16 body parts.
VDRC has 2 RNAi stocks for FBgn0033741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 14 of 4 0.20Down
Head82 ± 54 of 4 0.30Down
Eye38 ± 44 of 4 0.15Down
Thoracicoabdominal ganglion67 ± 24 of 4 0.30Down
Salivary gland112 ± 104 of 4 0.44Down
Crop103 ± 24 of 4 0.40Down
Midgut103 ± 44 of 4 0.40Down
Tubule76 ± 164 of 4 0.30Down
Hindgut57 ± 24 of 4 0.20Down
Heart66 ± 54 of 4 0.26Down
Fat body135 ± 204 of 4 0.53Down
Ovary601 ± 14 of 4 2.30Up
Testis30 ± 14 of 4 0.10Down
Male accessory glands203 ± 114 of 4 0.80Down
Virgin spermatheca102 ± 74 of 4 0.40Down
Mated spermatheca138 ± 64 of 4 0.54Down
Adult carcass78 ± 84 of 4 0.30Down
Larval CNS299 ± 84 of 4 1.16Up
Larval Salivary gland221 ± 254 of 4 0.86None
Larval midgut77 ± 114 of 4 0.30Down
Larval tubule29 ± 14 of 4 0.10Down
Larval hindgut122 ± 214 of 4 0.47Down
Larval fat body37 ± 14 of 4 0.10Down
Larval trachea234 ± 504 of 4 0.91None
Larval carcass205 ± 624 of 4 0.80None
S2 cells (growing)246 ± 54 of 4 0.96None
Whole fly257 ± 84 of 4

Looking for FBgn0033741. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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