FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033749 through 18771 annotations produced 2 hits

achintya /// vismay (achi /// vis):

Annotation Number : CG8821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033748 /// FBgn0033749
Gbrowse : chrUextra:519142-520852 (+) // 46.93 // /// chr2R:8395395-8398311 (-) // 100.0 //
Probeset : 1630768_s_at
Accessions : protein= NP_523714; /// NP_725182; /// NP_725183; /// NP_788337;, nucleotide= NM_078990; /// NM_165911; /// NM_165912; /// NM_176157;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0033748 /// FBgn0033749.
Homophila reports that CG8821 is a close match (7e-25) to human gene HPE4;TGIF (NP_733796), a gene associated with Holoprosencephaly-4, 142946 (3);Hypotrichosis simplex, contiguous gene syndrome with, 605389 (2).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	33 ± 0	4 of 4	0.80	None
Head	19 ± 2	2 of 4	0.50	Down
Eye	17 ± 0	4 of 4	0.41	Down
Thoracicoabdominal ganglion	19 ± 2	4 of 4	0.50	Down
Salivary gland	16 ± 4	0 of 4	0.40	Down
Crop	26 ± 3	4 of 4	0.60	Down
Midgut	13 ± 1	0 of 4	0.30	Down
Tubule	24 ± 0	3 of 4	0.60	Down
Hindgut	17 ± 2	2 of 4	0.40	Down
Heart	13 ± 1	4 of 4	0.32	Down
Fat body	23 ± 5	0 of 4	0.57	Down
Ovary	49 ± 1	4 of 4	1.20	None
Testis	429 ± 7	4 of 4	10.20	Up
Male accessory glands	42 ± 4	2 of 4	1.00	None
Virgin spermatheca	18 ± 2	2 of 4	0.45	Down
Mated spermatheca	23 ± 2	3 of 4	0.56	Down
Adult carcass	22 ± 2	0 of 4	0.50	Down
Larval CNS	50 ± 8	4 of 4	1.19	None
Larval Salivary gland	32 ± 1	1 of 4	0.77	Down
Larval midgut	14 ± 1	0 of 4	0.33	Down
Larval tubule	20 ± 1	4 of 4	0.50	Down
Larval hindgut	20 ± 1	2 of 4	0.49	Down
Larval fat body	71 ± 30	4 of 4	1.70	None
Larval trachea	23 ± 2	4 of 4	0.57	Down
Larval carcass	15 ± 1	0 of 4	0.36	Down
S2 cells (growing)	122 ± 7	4 of 4	2.91	Up
Whole fly	42 ± 2	4 of 4

achintya (achi):

Annotation Number : CG8819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033749
Gbrowse : chrUextra:519142-520852 (+) // 53.0 // /// chr2R:8399038-8402556 (-) // 99.84 // /// chr2R:8395374-8397963 (-) // 78.82 //
Probeset : 1638702_a_at
Accessions : protein= NP_725182; /// NP_725183;, nucleotide= NM_165911; /// NM_165912;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0033749.
BDGP gene expression has embryonic in situ data for achi: 19 pix of staining in 11 body parts.
Homophila reports that CG8819 is a close match (2e-26) to human gene HPE4;TGIF (NP_733796), a gene associated with Holoprosencephaly-4, 142946 (3);Hypotrichosis simplex, contiguous gene syndrome with, 605389 (2).
BioGrid reports that CG8819 interacts with CG13493 CG2075 .
TRiP has 3 RNAi stocks for FBgn0033749 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033749 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	25 ± 2	4 of 4	1.80	Up
Head	14 ± 1	4 of 4	1.10	None
Eye	10 ± 1	4 of 4	0.76	None
Thoracicoabdominal ganglion	14 ± 0	4 of 4	1.00	None
Salivary gland	26 ± 2	4 of 4	1.93	Up
Crop	14 ± 1	4 of 4	1.00	None
Midgut	14 ± 1	4 of 4	1.00	None
Tubule	12 ± 1	3 of 4	0.90	None
Hindgut	10 ± 1	3 of 4	0.80	None
Heart	8 ± 0	3 of 4	0.60	None
Fat body	28 ± 6	4 of 4	2.08	Up
Ovary	25 ± 2	4 of 4	1.90	Up
Testis	32 ± 3	4 of 4	2.40	Up
Male accessory glands	24 ± 2	4 of 4	1.80	Up
Virgin spermatheca	19 ± 1	4 of 4	1.44	None
Mated spermatheca	16 ± 1	4 of 4	1.17	None
Adult carcass	8 ± 3	2 of 4	0.60	None
Larval CNS	58 ± 22	4 of 4	4.23	Up
Larval Salivary gland	20 ± 1	4 of 4	1.52	Up
Larval midgut	17 ± 1	4 of 4	1.27	None
Larval tubule	13 ± 1	4 of 4	1.00	None
Larval hindgut	19 ± 1	4 of 4	1.43	None
Larval fat body	14 ± 1	4 of 4	1.10	None
Larval trachea	10 ± 1	4 of 4	0.79	None
Larval carcass	14 ± 1	4 of 4	1.03	None
S2 cells (growing)	17 ± 0	4 of 4	1.26	None
Whole fly	13 ± 2	4 of 4

Looking for FBgn0033749. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720