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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033750 through 18771 annotations produced 1 hits



(CG13151):

Annotation Number : CG13151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033750
Gbrowse : chr2R:8402883-8404789 (+) // 100.0 //
Probeset : 1633644_at
Accessions : protein= NP_610793;, nucleotide= NM_136949;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0033750.
BDGP gene expression has embryonic in situ data for CG13151: 4 pix of staining in 1 body parts.
BioGrid reports that CG13151 interacts with CG2129 CG15916 CG18217 CG2199 .
VDRC has 2 RNAi stocks for FBgn0033750 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 24 of 4 1.90Up
Head17 ± 22 of 4 0.90None
Eye27 ± 34 of 4 1.47None
Thoracicoabdominal ganglion42 ± 14 of 4 2.30Up
Salivary gland31 ± 72 of 4 1.71None
Crop28 ± 11 of 4 1.60Up
Midgut6 ± 11 of 4 0.40Down
Tubule13 ± 12 of 4 0.70Down
Hindgut22 ± 20 of 4 1.20None
Heart18 ± 33 of 4 1.01None
Fat body17 ± 30 of 4 0.95None
Ovary27 ± 04 of 4 1.50Up
Testis22 ± 14 of 4 1.20None
Male accessory glands29 ± 14 of 4 1.60Up
Virgin spermatheca12 ± 13 of 4 0.69Down
Mated spermatheca14 ± 14 of 4 0.76Down
Adult carcass7 ± 20 of 4 0.40Down
Larval CNS58 ± 64 of 4 3.16Up
Larval Salivary gland32 ± 24 of 4 1.77Up
Larval midgut20 ± 00 of 4 1.09None
Larval tubule27 ± 24 of 4 1.50Up
Larval hindgut25 ± 10 of 4 1.35Up
Larval fat body20 ± 20 of 4 1.10None
Larval trachea32 ± 21 of 4 1.75Up
Larval carcass15 ± 10 of 4 0.82None
S2 cells (growing)58 ± 24 of 4 3.16Up
Whole fly18 ± 14 of 4

Looking for FBgn0033750. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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