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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033752 through 18771 annotations produced 1 hits



(CG8569):

Annotation Number : CG8569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033752
Gbrowse : chr2R:8406653-8409131 (+) // 100.0 //
Probeset : 1630050_at
Accessions : protein= NP_610795;, nucleotide= NM_136951;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0033752.
BDGP gene expression has embryonic in situ data for CG8569: 12 pix of staining in 1 body parts.
BioGrid reports that CG8569 interacts with CG9188 .
VDRC has 1 RNAi stocks for FBgn0033752 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 14 of 4 0.90None
Head41 ± 64 of 4 0.90None
Eye57 ± 24 of 4 1.19None
Thoracicoabdominal ganglion43 ± 14 of 4 0.90None
Salivary gland52 ± 83 of 4 1.08None
Crop55 ± 44 of 4 1.10None
Midgut39 ± 44 of 4 0.80None
Tubule58 ± 34 of 4 1.20Up
Hindgut53 ± 04 of 4 1.10None
Heart35 ± 34 of 4 0.72Down
Fat body35 ± 94 of 4 0.74None
Ovary107 ± 54 of 4 2.20Up
Testis37 ± 44 of 4 0.80None
Male accessory glands48 ± 13 of 4 1.00None
Virgin spermatheca83 ± 34 of 4 1.71Up
Mated spermatheca81 ± 74 of 4 1.68Up
Adult carcass36 ± 33 of 4 0.80None
Larval CNS63 ± 64 of 4 1.32Up
Larval Salivary gland72 ± 14 of 4 1.48Up
Larval midgut52 ± 54 of 4 1.07None
Larval tubule69 ± 24 of 4 1.40Up
Larval hindgut53 ± 44 of 4 1.10None
Larval fat body43 ± 24 of 4 0.90None
Larval trachea65 ± 94 of 4 1.35Up
Larval carcass50 ± 34 of 4 1.04None
S2 cells (growing)55 ± 24 of 4 1.15None
Whole fly48 ± 34 of 4

Looking for FBgn0033752. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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