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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033762 through 18771 annotations produced 1 hits



(CG8632):

Annotation Number : CG8632
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033762
Gbrowse : chr2R:8540311-8543244 (+) // 100.0 //
Probeset : 1630202_a_at
Accessions : protein= NP_610806; /// NP_725207;, nucleotide= NM_136962; /// NM_165933;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter act
FlyMine data for FBgn0033762.
BDGP gene expression has embryonic in situ data for CG8632: 14 pix of staining in 8 body parts.
TRiP has 2 RNAi stocks for FBgn0033762 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain406 ± 94 of 4 2.20Up
Head270 ± 94 of 4 1.40Up
Eye317 ± 134 of 4 1.69Up
Thoracicoabdominal ganglion505 ± 34 of 4 2.70Up
Salivary gland133 ± 104 of 4 0.71Down
Crop281 ± 64 of 4 1.50Up
Midgut144 ± 34 of 4 0.80Down
Tubule286 ± 74 of 4 1.50Up
Hindgut189 ± 14 of 4 1.00None
Heart194 ± 54 of 4 1.04None
Fat body166 ± 114 of 4 0.89None
Ovary281 ± 04 of 4 1.50Up
Testis119 ± 24 of 4 0.60Down
Male accessory glands117 ± 34 of 4 0.60Down
Virgin spermatheca331 ± 54 of 4 1.77Up
Mated spermatheca309 ± 204 of 4 1.65Up
Adult carcass209 ± 54 of 4 1.10None
Larval CNS177 ± 54 of 4 0.95None
Larval Salivary gland130 ± 54 of 4 0.70Down
Larval midgut138 ± 74 of 4 0.74Down
Larval tubule190 ± 54 of 4 1.00None
Larval hindgut184 ± 64 of 4 0.98None
Larval fat body103 ± 54 of 4 0.60Down
Larval trachea191 ± 84 of 4 1.02None
Larval carcass209 ± 74 of 4 1.12None
S2 cells (growing)165 ± 24 of 4 0.88None
Whole fly187 ± 94 of 4

Looking for FBgn0033762. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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