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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033763 through 18771 annotations produced 1 hits


Annotation Number : CG8646
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033763
Gbrowse : chr2R:8543460-8546853 (+) // 100.0 //
Probeset : 1638656_at
Accessions : protein= NP_610807;, nucleotide= NM_136963;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003943 // N-acetylgalactosamine-4-sulfatase ac
FlyMine data for FBgn0033763.
BDGP gene expression has embryonic in situ data for CG8646: 17 pix of staining in 3 body parts.
Homophila reports that CG8646 is a close match (2e-11) to human gene MPS3A;SFMD;SGSH (NP_000190), a gene associated with Sanfilippo syndrome, type A, 252900 (3).
VDRC has 2 RNAi stocks for FBgn0033763 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 11 of 4 0.80None
Head20 24 of 4 1.90Up
Eye22 24 of 4 2.05Up
Thoracicoabdominal ganglion7 10 of 4 0.70None
Salivary gland2 10 of 4 0.26Down
Crop2 00 of 4 0.30Down
Midgut3 10 of 4 0.30Down
Tubule1 00 of 4 0.20Down
Hindgut20 13 of 4 1.80Up
Heart9 23 of 4 0.91None
Fat body15 61 of 4 1.40None
Ovary6 10 of 4 0.50None
Testis7 10 of 4 0.70None
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.22Down
Mated spermatheca6 20 of 4 0.58None
Adult carcass22 22 of 4 2.10Up
Larval CNS4 20 of 4 0.37Down
Larval Salivary gland2 00 of 4 0.20Down
Larval midgut2 10 of 4 0.22Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut28 64 of 4 2.60None
Larval fat body2 00 of 4 0.20Down
Larval trachea6 10 of 4 0.59None
Larval carcass34 24 of 4 3.13Up
S2 cells (growing)6 10 of 4 0.61None
Whole fly11 10 of 4

Looking for FBgn0033763. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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