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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033773 through 18771 annotations produced 1 hits

mos (mos):

Annotation Number : CG8767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033773
Gbrowse : chr2R:8639198-8640407 (-) // 100.0 //
Probeset : 1640434_at
Accessions : protein= NP_610817;, nucleotide= NM_136973;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0033773.
Homophila reports that CG8767 is a close match (3e-11) to human gene SRK;STD;ZAP70 (NP_997402), a gene associated with Selective T-cell defect (3).
TRiP has 1 RNAi stocks for FBgn0033773 available for purchase.
VDRC has 4 RNAi stocks for FBgn0033773 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.00Down
Head6 11 of 4 0.10Down
Eye2 00 of 4 0.02Down
Thoracicoabdominal ganglion8 20 of 4 0.10Down
Salivary gland19 20 of 4 0.16Down
Crop6 11 of 4 0.10Down
Midgut15 02 of 4 0.10Down
Tubule11 10 of 4 0.10Down
Hindgut8 10 of 4 0.10Down
Heart4 00 of 4 0.03Down
Fat body13 32 of 4 0.11Down
Ovary298 44 of 4 2.40Up
Testis6 02 of 4 0.10Down
Male accessory glands6 30 of 4 0.10Down
Virgin spermatheca13 32 of 4 0.11Down
Mated spermatheca12 21 of 4 0.10Down
Adult carcass18 41 of 4 0.20Down
Larval CNS8 11 of 4 0.07Down
Larval Salivary gland7 10 of 4 0.06Down
Larval midgut12 13 of 4 0.10Down
Larval tubule12 02 of 4 0.10Down
Larval hindgut5 00 of 4 0.04Down
Larval fat body9 20 of 4 0.10Down
Larval trachea5 33 of 4 0.04Down
Larval carcass8 10 of 4 0.06Down
S2 cells (growing)10 03 of 4 0.09Down
Whole fly123 44 of 4

Looking for FBgn0033773. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime