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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033775 through 18771 annotations produced 1 hits



Cyp9h1 (Cyp9h1):

Annotation Number : CG17577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033775
Gbrowse : chr2R:8728340-8730026 (-) // 100.0 //
Probeset : 1624159_at
Accessions : protein= NP_610820;, nucleotide= NM_136976;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033775.
Homophila reports that CG17577 is a close match (4e-11) to human gene CYP2R1 (NP_078790), a gene associated with Rickets due to defect in vitamin D 25-hydroxylation, 600081 (3).
VDRC has 2 RNAi stocks for FBgn0033775 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 24 of 4 3.20Up
Head80 124 of 4 3.90Up
Eye34 44 of 4 1.67None
Thoracicoabdominal ganglion109 84 of 4 5.30Up
Salivary gland15 52 of 4 0.77None
Crop11 12 of 4 0.50Down
Midgut166 74 of 4 8.10Up
Tubule11 22 of 4 0.60Down
Hindgut84 34 of 4 4.10Up
Heart33 34 of 4 1.60Up
Fat body60 114 of 4 2.95Up
Ovary2 10 of 4 0.10Down
Testis3 00 of 4 0.20Down
Male accessory glands6 10 of 4 0.30Down
Virgin spermatheca74 74 of 4 3.61Up
Mated spermatheca32 54 of 4 1.59None
Adult carcass66 44 of 4 3.20Up
Larval CNS40 124 of 4 1.97Up
Larval Salivary gland11 23 of 4 0.54Down
Larval midgut67 94 of 4 3.26Up
Larval tubule29 104 of 4 1.40None
Larval hindgut284 444 of 413.79Up
Larval fat body308 314 of 415.00Up
Larval trachea5 22 of 4 0.26Down
Larval carcass21 14 of 4 1.06None
S2 cells (growing)7 04 of 4 0.36Down
Whole fly20 24 of 4

Looking for FBgn0033775. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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