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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033777 through 18771 annotations produced 1 hits



(CG17574):

Annotation Number : CG17574
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033777
Gbrowse : chr2R:8736862-8756928 (-) // 100.0 //
Probeset : 1636382_at
Accessions : protein= NP_001097292; /// NP_001097293; /// NP_001097294; /// NP_610822;, nucleotide= NM_001103822; /// NM_001103823; /// NM_001103824; /// NM_136978;
FlyMine data for FBgn0033777.
BDGP gene expression has embryonic in situ data for CG17574: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain286 ± 144 of 4 0.50Down
Head469 ± 184 of 4 0.80Down
Eye224 ± 244 of 4 0.37Down
Thoracicoabdominal ganglion271 ± 164 of 4 0.50Down
Salivary gland521 ± 164 of 4 0.87None
Crop182 ± 54 of 4 0.30Down
Midgut2623 ± 674 of 4 4.40Up
Tubule2291 ± 1064 of 4 3.80Up
Hindgut762 ± 164 of 4 1.30Up
Heart1775 ± 634 of 4 2.95Up
Fat body318 ± 374 of 4 0.53Down
Ovary535 ± 154 of 4 0.90None
Testis246 ± 94 of 4 0.40Down
Male accessory glands514 ± 44 of 4 0.90None
Virgin spermatheca346 ± 54 of 4 0.57Down
Mated spermatheca291 ± 94 of 4 0.48Down
Adult carcass605 ± 134 of 4 1.00None
Larval CNS263 ± 154 of 4 0.44Down
Larval Salivary gland801 ± 184 of 4 1.33Up
Larval midgut3013 ± 774 of 4 5.00Up
Larval tubule1216 ± 304 of 4 2.00Up
Larval hindgut1101 ± 424 of 4 1.83Up
Larval fat body487 ± 414 of 4 0.80None
Larval trachea286 ± 104 of 4 0.48Down
Larval carcass291 ± 144 of 4 0.48Down
S2 cells (growing)654 ± 184 of 4 1.09None
Whole fly602 ± 314 of 4

Looking for FBgn0033777. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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