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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033782 through 18771 annotations produced 1 hits



sugarbabe (sug):

Annotation Number : CG3850
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033782
Gbrowse : chr2R:8816367-8818151 (+) // 100.0 //
Probeset : 1624195_at
Accessions : protein= NP_610826;, nucleotide= NM_136982;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0033782.
BDGP gene expression has embryonic in situ data for CG3850: 34 pix of staining in 4 body parts.
Homophila reports that CG3850 is a close match (9e-13) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG3850 interacts with CG7583 CG4057 CG8495 .
TRiP has 1 RNAi stocks for FBgn0033782 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033782 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 22 of 4 0.10Down
Head197 244 of 4 1.40None
Eye90 194 of 4 0.66None
Thoracicoabdominal ganglion9 02 of 4 0.10Down
Salivary gland9 20 of 4 0.07Down
Crop8 31 of 4 0.10Down
Midgut583 294 of 4 4.30Up
Tubule454 624 of 4 3.30Up
Hindgut95 144 of 4 0.70None
Heart485 604 of 4 3.54Up
Fat body863 994 of 4 6.30Up
Ovary4 00 of 4 0.00Down
Testis5 10 of 4 0.00Down
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca650 394 of 4 4.74Up
Mated spermatheca692 474 of 4 5.05Up
Adult carcass370 384 of 4 2.70Up
Larval CNS6 11 of 4 0.05Down
Larval Salivary gland15 14 of 4 0.11Down
Larval midgut529 594 of 4 3.86Up
Larval tubule367 524 of 4 2.70Up
Larval hindgut117 194 of 4 0.86None
Larval fat body549 894 of 4 4.00Up
Larval trachea14 83 of 4 0.11Down
Larval carcass11 01 of 4 0.08Down
S2 cells (growing)27 34 of 4 0.20Down
Whole fly137 134 of 4

Looking for FBgn0033782. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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