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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033793 through 18771 annotations produced 1 hits



(CG3955):

Annotation Number : CG3955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033793
Gbrowse : chr2R:9015416-9016559 (-) // 100.0 //
Probeset : 1636491_at
Accessions : protein= NP_610837;, nucleotide= NM_136993;
FlyMine data for FBgn0033793.
VDRC has 2 RNAi stocks for FBgn0033793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain649 84 of 418.10Up
Head221 154 of 4 6.20Up
Eye581 224 of 416.23Up
Thoracicoabdominal ganglion525 104 of 414.70Up
Salivary gland1 00 of 4 0.04Down
Crop1 00 of 4 0.00Down
Midgut3 10 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart5 10 of 4 0.14Down
Fat body8 10 of 4 0.24Down
Ovary4 00 of 4 0.10Down
Testis177 84 of 4 5.00Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.10Down
Mated spermatheca4 20 of 4 0.13Down
Adult carcass13 30 of 4 0.40Down
Larval CNS148 124 of 4 4.14Up
Larval Salivary gland2 00 of 4 0.06Down
Larval midgut1 00 of 4 0.04Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.07Down
Larval fat body20 81 of 4 0.60None
Larval trachea8 121 of 4 0.23Down
Larval carcass4 20 of 4 0.13Down
S2 cells (growing)2 10 of 4 0.06Down
Whole fly35 14 of 4

Looking for FBgn0033793. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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