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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033794 through 18771 annotations produced 1 hits


Annotation Number : CG13326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033794
Gbrowse : chr2R:9017015-9019960 (-) // 100.0 //
Probeset : 1640628_at
Accessions : protein= NP_610838;, nucleotide= NM_136994;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0033794.
BDGP gene expression has embryonic in situ data for CG13326: 2 pix of staining in 1 body parts.
BioGrid reports that CG13326 interacts with CG8597 .
VDRC has 3 RNAi stocks for FBgn0033794 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion6 11 of 4 0.20Down
Salivary gland4 10 of 4 0.14Down
Crop2 10 of 4 0.10Down
Midgut4 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart4 10 of 4 0.14Down
Fat body6 21 of 4 0.17Down
Ovary2 00 of 4 0.10Down
Testis533 254 of 415.60Up
Male accessory glands5 00 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.09Down
Mated spermatheca5 00 of 4 0.16Down
Adult carcass8 20 of 4 0.20Down
Larval CNS2 10 of 4 0.08Down
Larval Salivary gland3 10 of 4 0.10Down
Larval midgut2 10 of 4 0.08Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 00 of 4 0.09Down
Larval fat body49 263 of 4 1.50None
Larval trachea2 10 of 4 0.06Down
Larval carcass1 00 of 4 0.04Down
S2 cells (growing)5 01 of 4 0.15Down
Whole fly34 14 of 4

Looking for FBgn0033794. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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