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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033802 through 18771 annotations produced 2 hits



/// sequoia (CG17724 /// seq):

Annotation Number : LD12453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028991 /// FBgn0033802
Gbrowse : chr2R:9067169-9077579 (-) // 100.0 //
Probeset : 1635558_s_at
Accessions : protein= NP_001027415; /// NP_651957;, nucleotide= NM_001032244; /// NM_143700;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0028991 /// FBgn0033802.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 94 of 4 4.00Up
Head17 ± 43 of 4 0.70None
Eye336 ± 174 of 414.47Up
Thoracicoabdominal ganglion37 ± 54 of 4 1.60None
Salivary gland23 ± 72 of 4 1.00None
Crop40 ± 44 of 4 1.70Up
Midgut117 ± 84 of 4 5.00Up
Tubule55 ± 44 of 4 2.40Up
Hindgut78 ± 114 of 4 3.40Up
Heart91 ± 34 of 4 3.92Up
Fat body25 ± 44 of 4 1.11None
Ovary60 ± 14 of 4 2.60Up
Testis24 ± 14 of 4 1.00None
Male accessory glands45 ± 74 of 4 2.00None
Virgin spermatheca42 ± 24 of 4 1.82Up
Mated spermatheca38 ± 14 of 4 1.67Up
Adult carcass16 ± 40 of 4 0.70None
Larval CNS120 ± 274 of 4 5.17Up
Larval Salivary gland14 ± 10 of 4 0.61None
Larval midgut30 ± 04 of 4 1.30None
Larval tubule61 ± 34 of 4 2.70Up
Larval hindgut19 ± 22 of 4 0.82None
Larval fat body20 ± 20 of 4 0.90None
Larval trachea116 ± 154 of 4 4.99Up
Larval carcass10 ± 10 of 4 0.44None
S2 cells (growing)21 ± 14 of 4 0.94None
Whole fly23 ± 44 of 4



/// sequoia (CG17724 /// seq):

Annotation Number : CG17724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033802
Gbrowse : chr2R:9063596-9073317 (-) // 100.0 //
Probeset : 1639555_at
Accessions : protein= NP_651957;, nucleotide= NM_143700;
FlyMine data for FBgn0033802.
VDRC has 1 RNAi stocks for FBgn0033802 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain687 ± 94 of 4 3.90Up
Head198 ± 54 of 4 1.10None
Eye343 ± 264 of 4 1.95Up
Thoracicoabdominal ganglion508 ± 44 of 4 2.90Up
Salivary gland242 ± 124 of 4 1.38Up
Crop144 ± 54 of 4 0.80Down
Midgut356 ± 84 of 4 2.00Up
Tubule382 ± 384 of 4 2.20Up
Hindgut214 ± 34 of 4 1.20Up
Heart83 ± 54 of 4 0.48Down
Fat body100 ± 104 of 4 0.57Down
Ovary576 ± 184 of 4 3.30Up
Testis31 ± 34 of 4 0.20Down
Male accessory glands152 ± 94 of 4 0.90None
Virgin spermatheca157 ± 84 of 4 0.89None
Mated spermatheca136 ± 94 of 4 0.78Down
Adult carcass74 ± 14 of 4 0.40Down
Larval CNS1313 ± 554 of 4 7.46Up
Larval Salivary gland249 ± 134 of 4 1.42Up
Larval midgut230 ± 124 of 4 1.31Up
Larval tubule334 ± 154 of 4 1.90Up
Larval hindgut159 ± 74 of 4 0.91None
Larval fat body80 ± 44 of 4 0.50Down
Larval trachea156 ± 64 of 4 0.89None
Larval carcass109 ± 44 of 4 0.62Down
S2 cells (growing)256 ± 84 of 4 1.46Up
Whole fly175 ± 94 of 4

Looking for FBgn0033802. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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