FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033806 through 18771 annotations produced 1 hits

FLASH ortholog (FLASH):

Annotation Number : CG4616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033806
Gbrowse : chr2R:9094260-9097981 (+) // 100.0 //
Probeset : 1627164_at
Accessions : protein= NP_610845; /// NP_995828;, nucleotide= NM_137001; /// NM_206106;
Pathway : 0035363 // histone locus body // inferred from direct assay
FlyMine data for FBgn0033806.
VDRC has 3 RNAi stocks for FBgn0033806 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	4 of 4	0.50	Down
Head	8 ± 0	2 of 4	0.40	Down
Eye	4 ± 2	1 of 4	0.21	Down
Thoracicoabdominal ganglion	11 ± 1	2 of 4	0.50	Down
Salivary gland	9 ± 1	0 of 4	0.43	Down
Crop	6 ± 1	0 of 4	0.30	Down
Midgut	4 ± 1	0 of 4	0.20	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	6 ± 1	0 of 4	0.30	Down
Heart	3 ± 0	1 of 4	0.17	Down
Fat body	12 ± 4	1 of 4	0.55	Down
Ovary	25 ± 1	4 of 4	1.10	None
Testis	49 ± 4	4 of 4	2.20	Up
Male accessory glands	11 ± 3	2 of 4	0.50	Down
Virgin spermatheca	8 ± 2	1 of 4	0.36	Down
Mated spermatheca	12 ± 1	2 of 4	0.56	Down
Adult carcass	7 ± 2	0 of 4	0.30	Down
Larval CNS	21 ± 0	4 of 4	0.94	None
Larval Salivary gland	11 ± 1	2 of 4	0.53	Down
Larval midgut	5 ± 1	0 of 4	0.24	Down
Larval tubule	10 ± 1	1 of 4	0.50	Down
Larval hindgut	7 ± 0	1 of 4	0.34	Down
Larval fat body	25 ± 8	1 of 4	1.10	None
Larval trachea	10 ± 6	2 of 4	0.48	Down
Larval carcass	10 ± 1	1 of 4	0.47	Down
S2 cells (growing)	9 ± 0	0 of 4	0.41	Down
Whole fly	22 ± 2	4 of 4

Looking for FBgn0033806. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720