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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033812 through 18771 annotations produced 1 hits



peroxin 13 (pex13):

Annotation Number : CG4663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033812
Gbrowse : chr2R:9115771-9117733 (-) // 100.0 //
Probeset : 1632704_at
Accessions : protein= NP_610850;, nucleotide= NM_137006;
Pathway : docking // inferred from electronic annotation /// 0048137 // spermatocyte division // inferred from mutant phenotype"
Interpro : 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from sequen
FlyMine data for FBgn0033812.
Homophila reports that CG4663 is a close match (3e-27) to human gene PEX13;ZWS;NALD (NP_002609), a gene associated with Adrenoleukodystrophy, neonatal, 202370 (3);Zellweger syndrome, 214100 (3).
BioGrid reports that CG4663 interacts with CG5325 .
VDRC has 3 RNAi stocks for FBgn0033812 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain331 ± 104 of 4 1.60Up
Head218 ± 134 of 4 1.10None
Eye189 ± 84 of 4 0.93None
Thoracicoabdominal ganglion343 ± 114 of 4 1.70Up
Salivary gland214 ± 124 of 4 1.05None
Crop453 ± 94 of 4 2.20Up
Midgut616 ± 204 of 4 3.00Up
Tubule684 ± 144 of 4 3.40Up
Hindgut303 ± 154 of 4 1.50Up
Heart139 ± 24 of 4 0.68Down
Fat body209 ± 54 of 4 1.02None
Ovary359 ± 204 of 4 1.80Up
Testis146 ± 94 of 4 0.70Down
Male accessory glands233 ± 124 of 4 1.10None
Virgin spermatheca173 ± 24 of 4 0.85Down
Mated spermatheca165 ± 84 of 4 0.81Down
Adult carcass198 ± 164 of 4 1.00None
Larval CNS226 ± 114 of 4 1.11None
Larval Salivary gland162 ± 74 of 4 0.80Down
Larval midgut663 ± 214 of 4 3.25Up
Larval tubule897 ± 64 of 4 4.40Up
Larval hindgut223 ± 74 of 4 1.09None
Larval fat body436 ± 204 of 4 2.10Up
Larval trachea144 ± 184 of 4 0.71Down
Larval carcass138 ± 64 of 4 0.68Down
S2 cells (growing)207 ± 64 of 4 1.01None
Whole fly204 ± 94 of 4

Looking for FBgn0033812. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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