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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033815 through 18771 annotations produced 1 hits



(CG4676):

Annotation Number : CG4676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033815
Gbrowse : chr2R:9123366-9124426 (+) // 100.0 //
Probeset : 1628768_at
Accessions : protein= NP_610853;, nucleotide= NM_137009;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0033815.
VDRC has 2 RNAi stocks for FBgn0033815 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 24 of 4 3.00Up
Head23 33 of 4 0.80None
Eye27 04 of 4 0.97None
Thoracicoabdominal ganglion44 34 of 4 1.60Up
Salivary gland10 10 of 4 0.37Down
Crop4 00 of 4 0.20Down
Midgut8 10 of 4 0.30Down
Tubule5 00 of 4 0.20Down
Hindgut7 10 of 4 0.30Down
Heart2 10 of 4 0.08Down
Fat body7 40 of 4 0.26Down
Ovary52 24 of 4 1.80Up
Testis56 24 of 4 2.00Up
Male accessory glands9 20 of 4 0.30Down
Virgin spermatheca3 20 of 4 0.14Down
Mated spermatheca2 00 of 4 0.08Down
Adult carcass11 20 of 4 0.40Down
Larval CNS38 44 of 4 1.37Up
Larval Salivary gland9 10 of 4 0.35Down
Larval midgut6 20 of 4 0.21Down
Larval tubule8 21 of 4 0.30Down
Larval hindgut4 10 of 4 0.14Down
Larval fat body14 51 of 4 0.50None
Larval trachea4 20 of 4 0.14Down
Larval carcass7 10 of 4 0.26Down
S2 cells (growing)8 02 of 4 0.30Down
Whole fly28 24 of 4

Looking for FBgn0033815. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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