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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033817 through 18771 annotations produced 1 hits



(CG4688):

Annotation Number : CG4688
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033817
Gbrowse : chr2R:9127232-9128523 (+) // 100.0 //
Probeset : 1631165_at
Accessions : protein= NP_610855;, nucleotide= NM_137011;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0033817.
VDRC has 4 RNAi stocks for FBgn0033817 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10None
Head157 ± 114 of 411.90Up
Eye665 ± 274 of 450.36Up
Thoracicoabdominal ganglion0 ± 00 of 4 0.00None
Salivary gland3 ± 00 of 4 0.24None
Crop1 ± 00 of 4 0.10None
Midgut0 ± 00 of 4 0.00None
Tubule0 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00None
Heart0 ± 00 of 4 0.06None
Fat body2 ± 00 of 4 0.15None
Ovary8 ± 20 of 4 0.70None
Testis3 ± 00 of 4 0.30None
Male accessory glands2 ± 10 of 4 0.20None
Virgin spermatheca1 ± 00 of 4 0.08None
Mated spermatheca1 ± 00 of 4 0.08None
Adult carcass0 ± 00 of 4 0.10None
Larval CNS13 ± 91 of 4 1.05None
Larval Salivary gland1 ± 00 of 4 0.08None
Larval midgut0 ± 00 of 4 0.05None
Larval tubule0 ± 00 of 4 0.00None
Larval hindgut0 ± 00 of 4 0.05None
Larval fat body11 ± 10 of 4 0.80None
Larval trachea9 ± 161 of 4 0.70None
Larval carcass1 ± 00 of 4 0.10None
S2 cells (growing)0 ± 00 of 4 0.05None
Whole fly13 ± 41 of 4

Looking for FBgn0033817. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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