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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033821 through 18771 annotations produced 1 hits



(CG10799):

Annotation Number : CG10799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033821
Gbrowse : chr2R:9145390-9145997 (+) // 100.0 //
Probeset : 1637367_at
Accessions : protein= NP_610859;, nucleotide= NM_137015;
FlyMine data for FBgn0033821.
BioGrid reports that CG10799 interacts with CG1640 .
VDRC has 2 RNAi stocks for FBgn0033821 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 84 of 4 0.20Down
Head1935 ± 1414 of 4 4.50Up
Eye1745 ± 1094 of 4 4.04Up
Thoracicoabdominal ganglion50 ± 54 of 4 0.10Down
Salivary gland15 ± 31 of 4 0.03Down
Crop44 ± 74 of 4 0.10Down
Midgut621 ± 274 of 4 1.40None
Tubule48 ± 74 of 4 0.10Down
Hindgut144 ± 84 of 4 0.30Down
Heart2306 ± 1514 of 4 5.34Up
Fat body3042 ± 1744 of 4 7.04Up
Ovary3 ± 00 of 4 0.00Down
Testis17 ± 24 of 4 0.00Down
Male accessory glands8 ± 31 of 4 0.00Down
Virgin spermatheca2670 ± 374 of 4 6.18Up
Mated spermatheca2344 ± 1574 of 4 5.42Up
Adult carcass1431 ± 404 of 4 3.30Up
Larval CNS4 ± 42 of 4 0.01Down
Larval Salivary gland33 ± 44 of 4 0.08Down
Larval midgut603 ± 304 of 4 1.40None
Larval tubule12 ± 24 of 4 0.00Down
Larval hindgut67 ± 84 of 4 0.16Down
Larval fat body3246 ± 5024 of 4 7.50Up
Larval trachea69 ± 594 of 4 0.16Down
Larval carcass25 ± 34 of 4 0.06Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly432 ± 674 of 4

Looking for FBgn0033821. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime