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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033827 through 18771 annotations produced 1 hits


Annotation Number : CG17047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033827
Gbrowse : chr2R:9187159-9188977 (+) // 100.0 //
Probeset : 1627809_at
Accessions : protein= NP_610865;, nucleotide= NM_137021;
FlyMine data for FBgn0033827.
VDRC has 3 RNAi stocks for FBgn0033827 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head2 10 of 4 0.70None
Eye1 10 of 4 0.48None
Thoracicoabdominal ganglion3 10 of 4 0.90None
Salivary gland5 30 of 4 1.44None
Crop1 00 of 4 0.30None
Midgut32 44 of 4 8.90Up
Tubule6 10 of 4 1.60Up
Hindgut2 00 of 4 0.70None
Heart1 00 of 4 0.39None
Fat body3 20 of 4 0.82None
Ovary1 00 of 4 0.40None
Testis4 00 of 4 1.10None
Male accessory glands4 20 of 4 1.20None
Virgin spermatheca1 00 of 4 0.29None
Mated spermatheca1 00 of 4 0.40None
Adult carcass4 30 of 4 1.30None
Larval CNS0 00 of 4 0.23None
Larval Salivary gland1 00 of 4 0.37None
Larval midgut20 42 of 4 5.64Up
Larval tubule52 74 of 414.30Up
Larval hindgut90 104 of 424.63Up
Larval fat body2 00 of 4 0.70None
Larval trachea2 10 of 4 0.63None
Larval carcass2 00 of 4 0.59None
S2 cells (growing)1 00 of 4 0.32None
Whole fly3 10 of 4

Looking for FBgn0033827. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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