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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033828 through 18771 annotations produced 1 hits


(CG17048):

Annotation Number : CG17048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033828
Gbrowse : chr2R:9241313-9241838 (-) // 100.0 //
Probeset : 1641632_at
Accessions : protein= NP_610866;, nucleotide= NM_137022;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0033828.
BioGrid reports that CG17048 interacts with CG9195 .
VDRC has 2 RNAi stocks for FBgn0033828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.12Down
Crop4 ± 10 of 4 0.20Down
Midgut2 ± 00 of 4 0.10Down
Tubule3 ± 10 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.09Down
Fat body1 ± 00 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis292 ± 124 of 411.90Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.18Down
Mated spermatheca1 ± 00 of 4 0.08Down
Adult carcass3 ± 20 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.07Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule5 ± 20 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.18Down
Larval fat body38 ± 173 of 4 1.60None
Larval trachea2 ± 10 of 4 0.09Down
Larval carcass2 ± 00 of 4 0.10Down
S2 cells (growing)1 ± 10 of 4 0.08Down
Whole fly24 ± 24 of 4

Looking for FBgn0033828. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime