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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033834 through 18771 annotations produced 1 hits



(CG4744):

Annotation Number : CG4744
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033834
Gbrowse : chr2R:9282090-9286873 (-) // 100.0 //
Probeset : 1627371_at
Accessions : protein= NP_610871;, nucleotide= NM_137027;
FlyMine data for FBgn0033834.
BDGP gene expression has embryonic in situ data for CG4744: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.20Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland8 ± 20 of 4 0.38Down
Crop4 ± 20 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.20Down
Hindgut5 ± 11 of 4 0.30Down
Heart2 ± 00 of 4 0.09Down
Fat body7 ± 51 of 4 0.35Down
Ovary4 ± 00 of 4 0.20Down
Testis342 ± 224 of 416.10Up
Male accessory glands7 ± 30 of 4 0.30Down
Virgin spermatheca4 ± 10 of 4 0.19Down
Mated spermatheca6 ± 20 of 4 0.29Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS6 ± 22 of 4 0.29Down
Larval Salivary gland5 ± 11 of 4 0.27Down
Larval midgut4 ± 10 of 4 0.22Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.16Down
Larval fat body43 ± 203 of 4 2.00None
Larval trachea4 ± 10 of 4 0.21Down
Larval carcass6 ± 12 of 4 0.30Down
S2 cells (growing)4 ± 00 of 4 0.19Down
Whole fly21 ± 14 of 4

Looking for FBgn0033834. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime