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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033836 through 18771 annotations produced 1 hits



/// (CG18278 /// CG30059):

Annotation Number : CG18278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033836 /// FBgn0260475
Gbrowse : chrUextra:269596-270927 (-) // 69.71 // /// chr2R:9295546-9297458 (-) // 100.0 // /// chr2R:9300273-9302184 (-) // 99.02 //
Probeset : 1631549_s_at
Accessions : protein= NP_610872; /// NP_725289;, nucleotide= NM_137028; /// NM_165983;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008449 // N-acetylglucosamine-6-sulfatase acti
FlyMine data for FBgn0033836 /// FBgn0260475.
Homophila reports that CG18278 is a close match (4e-111) to human gene G6S;GNS (NP_002067), a gene associated with Mucopolysaccharidosis type IIID, 252940 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 14 of 4 0.80Down
Head96 64 of 4 1.10None
Eye54 14 of 4 0.60Down
Thoracicoabdominal ganglion92 54 of 4 1.00None
Salivary gland38 34 of 4 0.43Down
Crop138 24 of 4 1.50Up
Midgut11 12 of 4 0.10Down
Tubule13 41 of 4 0.10Down
Hindgut144 64 of 4 1.60Up
Heart153 134 of 4 1.71Up
Fat body107 154 of 4 1.19None
Ovary308 134 of 4 3.40Up
Testis35 24 of 4 0.40Down
Male accessory glands22 43 of 4 0.30Down
Virgin spermatheca118 24 of 4 1.31Up
Mated spermatheca98 54 of 4 1.09None
Adult carcass85 64 of 4 0.90None
Larval CNS99 164 of 4 1.10None
Larval Salivary gland12 02 of 4 0.14Down
Larval midgut17 13 of 4 0.19Down
Larval tubule17 13 of 4 0.20Down
Larval hindgut231 274 of 4 2.57Up
Larval fat body200 324 of 4 2.20Up
Larval trachea164 144 of 4 1.83Up
Larval carcass81 74 of 4 0.90None
S2 cells (growing)414 74 of 4 4.60Up
Whole fly90 74 of 4

Looking for FBgn0033836. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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