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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033842 through 18771 annotations produced 1 hits



CG5970 (cbc):

Annotation Number : CG5970
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033842
Gbrowse : chr2R:9371014-9372901 (-) // 100.0 //
Probeset : 1625549_at
Accessions : protein= NP_610876;, nucleotide= NM_137032;
Pathway : via endonucleolytic cleavage and ligation // inferred from sequence or structural similarity /// 0006397 // mRNA proces
Interpro : 0000214 // tRNA-intron endonuclease complex // inferred from sequence or structural similarity /// 0005634 // nucleus //
FlyMine data for FBgn0033842.
BDGP gene expression has embryonic in situ data for CG5970: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 44 of 4 1.10None
Head55 44 of 4 0.80None
Eye55 34 of 4 0.81Down
Thoracicoabdominal ganglion59 14 of 4 0.90None
Salivary gland40 31 of 4 0.59Down
Crop63 24 of 4 0.90None
Midgut42 44 of 4 0.60Down
Tubule50 34 of 4 0.70Down
Hindgut63 24 of 4 0.90None
Heart40 24 of 4 0.59Down
Fat body47 34 of 4 0.68Down
Ovary81 34 of 4 1.20Up
Testis101 74 of 4 1.50Up
Male accessory glands36 33 of 4 0.50Down
Virgin spermatheca30 24 of 4 0.44Down
Mated spermatheca27 24 of 4 0.40Down
Adult carcass54 24 of 4 0.80Down
Larval CNS61 14 of 4 0.89None
Larval Salivary gland39 21 of 4 0.57Down
Larval midgut35 23 of 4 0.52Down
Larval tubule49 34 of 4 0.70Down
Larval hindgut36 34 of 4 0.53Down
Larval fat body48 34 of 4 0.70Down
Larval trachea39 34 of 4 0.57Down
Larval carcass33 24 of 4 0.49Down
S2 cells (growing)66 14 of 4 0.97None
Whole fly68 34 of 4

Looking for FBgn0033842. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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