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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033844 through 18771 annotations produced 1 hits



CG6016 (bbc):

Annotation Number : CG6016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033844
Gbrowse : chr2R:9374171-9382374 (-) // 100.0 //
Probeset : 1641000_a_at
Accessions : protein= NP_610877; /// NP_725301;, nucleotide= NM_137033; /// NM_165993;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0004307 // ethanolaminephosphotransferase activity // inferred from sequence or structural similarity /// 0004307 // et
FlyMine data for FBgn0033844.
VDRC has 3 RNAi stocks for FBgn0033844 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain833 ± 264 of 4 2.40Up
Head450 ± 34 of 4 1.30Up
Eye424 ± 204 of 4 1.22Up
Thoracicoabdominal ganglion1741 ± 534 of 4 5.00Up
Salivary gland267 ± 204 of 4 0.77Down
Crop488 ± 74 of 4 1.40Up
Midgut433 ± 144 of 4 1.20Up
Tubule487 ± 184 of 4 1.40Up
Hindgut554 ± 274 of 4 1.60Up
Heart1149 ± 724 of 4 3.31Up
Fat body1021 ± 1534 of 4 2.94Up
Ovary294 ± 64 of 4 0.80Down
Testis75 ± 34 of 4 0.20Down
Male accessory glands159 ± 114 of 4 0.50Down
Virgin spermatheca338 ± 84 of 4 0.97None
Mated spermatheca344 ± 234 of 4 0.99None
Adult carcass978 ± 414 of 4 2.80Up
Larval CNS494 ± 384 of 4 1.42Up
Larval Salivary gland382 ± 294 of 4 1.10None
Larval midgut639 ± 414 of 4 1.84Up
Larval tubule775 ± 294 of 4 2.20Up
Larval hindgut313 ± 214 of 4 0.90None
Larval fat body118 ± 114 of 4 0.30Down
Larval trachea224 ± 154 of 4 0.65Down
Larval carcass390 ± 414 of 4 1.12None
S2 cells (growing)954 ± 164 of 4 2.74Up
Whole fly347 ± 74 of 4

Looking for FBgn0033844. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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