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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033848 through 18771 annotations produced 1 hits



(CG13330):

Annotation Number : CG13330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033848
Gbrowse : chr2R:9402763-9404951 (+) // 100.0 //
Probeset : 1632645_at
Accessions : protein= NP_610880;, nucleotide= NM_137036;
FlyMine data for FBgn0033848.
VDRC has 2 RNAi stocks for FBgn0033848 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.10Down
Salivary gland9 ± 50 of 4 0.13Down
Crop5 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.03Down
Fat body11 ± 30 of 4 0.15Down
Ovary2 ± 00 of 4 0.00Down
Testis895 ± 594 of 411.50Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 00 of 4 0.09Down
Mated spermatheca5 ± 21 of 4 0.08Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.04Down
Larval Salivary gland1 ± 10 of 4 0.02Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body54 ± 273 of 4 0.70None
Larval trachea6 ± 61 of 4 0.08Down
Larval carcass4 ± 10 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly77 ± 114 of 4

Looking for FBgn0033848. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime