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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033856 through 18771 annotations produced 1 hits



(CG13334):

Annotation Number : CG13334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033856
Gbrowse : chr2R:9446049-9447610 (+) // 100.0 //
Probeset : 1636339_at
Accessions : protein= NP_610888;, nucleotide= NM_137044;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004459 // L-lactate dehydrogenase activity //
FlyMine data for FBgn0033856.
Homophila reports that CG13334 is a close match (6e-63) to human gene LDH1;LDHA (NP_005557), a gene associated with Exertional myoglobinuria due to deficiency of LDH-A (3).
VDRC has 2 RNAi stocks for FBgn0033856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head3 ± 10 of 4 0.40None
Eye1 ± 00 of 4 0.18Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.40Down
Salivary gland16 ± 52 of 4 2.26None
Crop3 ± 11 of 4 0.50None
Midgut2 ± 00 of 4 0.30Down
Tubule3 ± 00 of 4 0.50Down
Hindgut4 ± 11 of 4 0.60None
Heart1 ± 00 of 4 0.15Down
Fat body6 ± 41 of 4 0.80None
Ovary3 ± 10 of 4 0.40Down
Testis52 ± 124 of 4 7.10Up
Male accessory glands8 ± 10 of 4 1.20None
Virgin spermatheca5 ± 11 of 4 0.74None
Mated spermatheca3 ± 00 of 4 0.41Down
Adult carcass5 ± 20 of 4 0.80None
Larval CNS2 ± 30 of 4 0.36None
Larval Salivary gland3 ± 10 of 4 0.42Down
Larval midgut1 ± 00 of 4 0.22Down
Larval tubule2 ± 00 of 4 0.30Down
Larval hindgut3 ± 10 of 4 0.47None
Larval fat body5 ± 11 of 4 0.70None
Larval trachea1 ± 00 of 4 0.18Down
Larval carcass3 ± 11 of 4 0.53None
S2 cells (growing)3 ± 10 of 4 0.52None
Whole fly7 ± 11 of 4

Looking for FBgn0033856. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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