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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033862 through 18771 annotations produced 1 hits



(CG6209):

Annotation Number : CG6209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033862
Gbrowse : chr2R:9548999-9551103 (-) // 100.0 //
Probeset : 1631022_at
Accessions : protein= NP_610894;, nucleotide= NM_137050;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0033862.
VDRC has 2 RNAi stocks for FBgn0033862 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye1 00 of 4 0.03Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland18 23 of 4 0.31Down
Crop3 10 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule4 10 of 4 0.10Down
Hindgut3 10 of 4 0.10Down
Heart1 00 of 4 0.03Down
Fat body7 31 of 4 0.12Down
Ovary3 00 of 4 0.10Down
Testis789 214 of 413.00Up
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca10 30 of 4 0.16Down
Mated spermatheca11 03 of 4 0.18Down
Adult carcass4 10 of 4 0.10Down
Larval CNS3 11 of 4 0.06Down
Larval Salivary gland3 00 of 4 0.06Down
Larval midgut3 20 of 4 0.06Down
Larval tubule3 20 of 4 0.10Down
Larval hindgut3 01 of 4 0.05Down
Larval fat body43 213 of 4 0.70None
Larval trachea4 10 of 4 0.07Down
Larval carcass2 10 of 4 0.05Down
S2 cells (growing)2 00 of 4 0.04Down
Whole fly60 34 of 4

Looking for FBgn0033862. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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