Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033865 through 18771 annotations produced 1 hits



(CG6220):

Annotation Number : CG6220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033865
Gbrowse : chr2R:9579304-9580874 (-) // 100.0 //
Probeset : 1629888_at
Accessions : protein= NP_610897;, nucleotide= NM_137053;
FlyMine data for FBgn0033865.
BDGP gene expression has embryonic in situ data for CG6220: 4 pix of staining in 1 body parts.
Homophila reports that CG6220 is a close match (4e-27) to human gene C1orf28;HRPT2 (NP_078805), a gene associated with Hyperparathyroidism, familial primary, 145000 (3);Hyperparathyroidism-jaw tumor syndrome, 145001 (3);Parathyroid adenoma with cystic changes, 145001 (3);Parathyroid carcinoma, 608266 (3).
BioGrid reports that CG6220 interacts with CG8745 CG8997 .
VDRC has 4 RNAi stocks for FBgn0033865 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.50Down
Head7 ± 10 of 4 0.60Down
Eye3 ± 10 of 4 0.27Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.40Down
Salivary gland6 ± 10 of 4 0.52Down
Crop8 ± 11 of 4 0.60None
Midgut6 ± 30 of 4 0.50None
Tubule7 ± 00 of 4 0.60Down
Hindgut5 ± 00 of 4 0.40Down
Heart4 ± 21 of 4 0.37Down
Fat body8 ± 51 of 4 0.67None
Ovary4 ± 10 of 4 0.30Down
Testis176 ± 14 of 413.70Up
Male accessory glands5 ± 20 of 4 0.40None
Virgin spermatheca6 ± 11 of 4 0.48Down
Mated spermatheca6 ± 12 of 4 0.47Down
Adult carcass8 ± 20 of 4 0.60None
Larval CNS6 ± 12 of 4 0.51Down
Larval Salivary gland3 ± 10 of 4 0.24Down
Larval midgut2 ± 00 of 4 0.19Down
Larval tubule5 ± 00 of 4 0.50Down
Larval hindgut4 ± 10 of 4 0.31Down
Larval fat body47 ± 183 of 4 3.70None
Larval trachea4 ± 20 of 4 0.37Down
Larval carcass8 ± 21 of 4 0.64None
S2 cells (growing)3 ± 10 of 4 0.30Down
Whole fly12 ± 04 of 4

Looking for FBgn0033865. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime