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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033868 through 18771 annotations produced 1 hits



/// /// (CG13340 /// DmauCG13340 /// DsimGD25742):

Annotation Number : CG13340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033868
Gbrowse : chr2R:9665628-9667750 (-) // 100.0 //
Probeset : 1635139_at
Accessions : protein= NP_610900;, nucleotide= NM_137056;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0033868.
BioGrid reports that CG13340 interacts with CG6899 .
VDRC has 1 RNAi stocks for FBgn0033868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head3 ± 20 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.00Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule6 ± 20 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body3 ± 20 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis3577 ± 1444 of 4 3.10Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca5 ± 30 of 4 0.00Down
Adult carcass21 ± 82 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut6 ± 50 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body883 ± 4314 of 4 0.80None
Larval trachea35 ± 611 of 4 0.03Down
Larval carcass3 ± 20 of 4 0.00Down
S2 cells (growing)2 ± 10 of 4 0.00Down
Whole fly1144 ± 794 of 4

Looking for FBgn0033868. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime