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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033871 through 18771 annotations produced 1 hits



(CG13339):

Annotation Number : CG13339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033871
Gbrowse : chr2R:9712396-9713077 (+) // 99.21 //
Probeset : 1626051_at
Accessions : protein= NP_610903;, nucleotide= NM_137059;
FlyMine data for FBgn0033871.
BDGP gene expression has embryonic in situ data for CG13339: 4 pix of staining in 1 body parts.
BioGrid reports that CG13339 interacts with CG17531 CG1759 .
VDRC has 2 RNAi stocks for FBgn0033871 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 34 of 4 1.30Up
Head96 ± 84 of 4 1.20None
Eye65 ± 44 of 4 0.82None
Thoracicoabdominal ganglion81 ± 44 of 4 1.00None
Salivary gland63 ± 60 of 4 0.80None
Crop126 ± 84 of 4 1.60Up
Midgut44 ± 22 of 4 0.60Down
Tubule35 ± 12 of 4 0.40Down
Hindgut62 ± 24 of 4 0.80None
Heart78 ± 74 of 4 0.98None
Fat body92 ± 134 of 4 1.15None
Ovary182 ± 24 of 4 2.30Up
Testis36 ± 24 of 4 0.50Down
Male accessory glands64 ± 64 of 4 0.80None
Virgin spermatheca88 ± 44 of 4 1.11None
Mated spermatheca72 ± 34 of 4 0.91None
Adult carcass72 ± 42 of 4 0.90None
Larval CNS58 ± 44 of 4 0.73None
Larval Salivary gland29 ± 33 of 4 0.37Down
Larval midgut30 ± 22 of 4 0.38Down
Larval tubule38 ± 21 of 4 0.50Down
Larval hindgut36 ± 22 of 4 0.45Down
Larval fat body38 ± 31 of 4 0.50Down
Larval trachea29 ± 32 of 4 0.37Down
Larval carcass22 ± 21 of 4 0.28Down
S2 cells (growing)32 ± 14 of 4 0.41Down
Whole fly79 ± 74 of 4

Looking for FBgn0033871. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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