FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033872 through 18771 annotations produced 2 hits

(CG6329):

Annotation Number : CG6329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033872
Gbrowse : chr2R:9713879-9720419 (+) // 100.0 //
Probeset : 1633533_at
Accessions : protein= NP_610904; /// NP_725328; /// NP_725329; /// NP_788349;, nucleotide= NM_137060; /// NM_166011; /// NM_166012; /// NM_176169;
FlyMine data for FBgn0033872.
BDGP gene expression has embryonic in situ data for CG6329: 12 pix of staining in 6 body parts.
BioGrid reports that CG6329 interacts with CG7637 .
TRiP has 1 RNAi stocks for FBgn0033872 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033872 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1952 ± 64	4 of 4	15.30	Up
Head	831 ± 43	4 of 4	6.50	Up
Eye	1809 ± 97	4 of 4	14.22	Up
Thoracicoabdominal ganglion	2652 ± 74	4 of 4	20.80	Up
Salivary gland	38 ± 1	4 of 4	0.30	Down
Crop	110 ± 7	4 of 4	0.90	None
Midgut	6 ± 0	4 of 4	0.10	Down
Tubule	11 ± 0	3 of 4	0.10	Down
Hindgut	22 ± 1	4 of 4	0.20	Down
Heart	129 ± 26	4 of 4	1.02	None
Fat body	89 ± 14	4 of 4	0.71	Down
Ovary	3 ± 0	2 of 4	0.00	Down
Testis	6 ± 0	4 of 4	0.00	Down
Male accessory glands	36 ± 4	4 of 4	0.30	Down
Virgin spermatheca	39 ± 5	4 of 4	0.31	Down
Mated spermatheca	63 ± 11	4 of 4	0.50	Down
Adult carcass	84 ± 8	4 of 4	0.70	Down
Larval CNS	1297 ± 84	4 of 4	10.20	Up
Larval Salivary gland	13 ± 3	4 of 4	0.11	Down
Larval midgut	4 ± 1	0 of 4	0.03	Down
Larval tubule	14 ± 3	3 of 4	0.10	Down
Larval hindgut	11 ± 2	4 of 4	0.09	Down
Larval fat body	7 ± 2	2 of 4	0.10	Down
Larval trachea	42 ± 59	4 of 4	0.34	None
Larval carcass	18 ± 1	4 of 4	0.14	Down
S2 cells (growing)	2 ± 0	1 of 4	0.02	Down
Whole fly	127 ± 9	4 of 4

(CG6329):

Annotation Number : CG6329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033872
Gbrowse : chr2R:9713914-9718880 (+) // 100.0 //
Probeset : 1629804_s_at
Accessions : protein= NP_610904; /// NP_725328; /// NP_725329; /// NP_788349;, nucleotide= NM_137060; /// NM_166011; /// NM_166012; /// NM_176169;
FlyMine data for FBgn0033872.
BDGP gene expression has embryonic in situ data for CG6329: 12 pix of staining in 6 body parts.
BioGrid reports that CG6329 interacts with CG7637 .
TRiP has 1 RNAi stocks for FBgn0033872 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033872 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	778 ± 15	4 of 4	12.30	Up
Head	298 ± 24	4 of 4	4.70	Up
Eye	1445 ± 86	4 of 4	22.79	Up
Thoracicoabdominal ganglion	851 ± 74	4 of 4	13.40	Up
Salivary gland	16 ± 4	0 of 4	0.27	Down
Crop	255 ± 9	4 of 4	4.00	Up
Midgut	44 ± 3	4 of 4	0.70	Down
Tubule	10 ± 1	1 of 4	0.20	Down
Hindgut	128 ± 4	4 of 4	2.00	Up
Heart	273 ± 33	4 of 4	4.30	Up
Fat body	70 ± 12	4 of 4	1.11	None
Ovary	9 ± 0	1 of 4	0.20	Down
Testis	20 ± 1	4 of 4	0.30	Down
Male accessory glands	59 ± 3	4 of 4	0.90	None
Virgin spermatheca	70 ± 3	4 of 4	1.12	None
Mated spermatheca	90 ± 8	4 of 4	1.42	Up
Adult carcass	75 ± 4	4 of 4	1.20	None
Larval CNS	421 ± 14	4 of 4	6.64	Up
Larval Salivary gland	1 ± 0	0 of 4	0.03	Down
Larval midgut	7 ± 1	0 of 4	0.11	Down
Larval tubule	10 ± 1	1 of 4	0.20	Down
Larval hindgut	9 ± 1	0 of 4	0.15	Down
Larval fat body	5 ± 2	0 of 4	0.10	Down
Larval trachea	39 ± 54	2 of 4	0.62	None
Larval carcass	14 ± 0	0 of 4	0.22	Down
S2 cells (growing)	9 ± 1	0 of 4	0.15	Down
Whole fly	63 ± 6	4 of 4

Looking for FBgn0033872. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720