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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033874 through 18771 annotations produced 1 hits


Annotation Number : CG6347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033874
Gbrowse : chr2R:9723925-9726869 (+) // 100.0 //
Probeset : 1623421_at
Accessions : protein= NP_610906;, nucleotide= NM_137062;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endo
FlyMine data for FBgn0033874.
BDGP gene expression has embryonic in situ data for CG6347: 12 pix of staining in 6 body parts.
Homophila reports that CG6347 is a close match (2e-21) to human gene CPPI;CTSC;HMS;JPD;PALS;PLS (NP_001805), a gene associated with Haim-Munk syndrome, 245010 (3);Papillon-Lefevre syndrome, 245000 (3);Periodontitis, juvenile, 170650 (3).
VDRC has 3 RNAi stocks for FBgn0033874 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head3 10 of 4 0.80None
Eye1 10 of 4 0.46None
Thoracicoabdominal ganglion4 20 of 4 1.00None
Salivary gland21 60 of 4 5.20None
Crop1 00 of 4 0.50None
Midgut7 10 of 4 1.80None
Tubule4 00 of 4 1.20Up
Hindgut4 20 of 4 1.10None
Heart3 10 of 4 0.81None
Fat body2 10 of 4 0.63None
Ovary2 00 of 4 0.50None
Testis1 00 of 4 0.30Down
Male accessory glands4 20 of 4 1.00None
Virgin spermatheca5 10 of 4 1.26None
Mated spermatheca4 00 of 4 1.09None
Adult carcass12 31 of 4 3.00None
Larval CNS1 00 of 4 0.25Down
Larval Salivary gland3 10 of 4 0.74None
Larval midgut5 10 of 4 1.41None
Larval tubule9 21 of 4 2.40None
Larval hindgut5 10 of 4 1.24None
Larval fat body4 20 of 4 1.20None
Larval trachea3 10 of 4 0.82None
Larval carcass4 10 of 4 1.02None
S2 cells (growing)2 10 of 4 0.65None
Whole fly4 00 of 4

Looking for FBgn0033874. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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