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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033876 through 18771 annotations produced 1 hits

synaptogyrin (synaptogyrin):

Annotation Number : CG10808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033876
Gbrowse : chr2R:9729254-9733757 (-) // 100.0 //
Probeset : 1639431_at
Accessions : protein= NP_610908;, nucleotide= NM_137064;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033876.
BDGP gene expression has embryonic in situ data for synaptogyrin: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0033876 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033876 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1936 314 of 421.80Up
Head988 674 of 411.10Up
Eye2348 1714 of 426.47Up
Thoracicoabdominal ganglion1798 364 of 420.30Up
Salivary gland11 60 of 4 0.13Down
Crop4 10 of 4 0.00Down
Midgut7 10 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut102 44 of 4 1.10None
Heart6 12 of 4 0.07Down
Fat body12 31 of 4 0.14Down
Ovary1 00 of 4 0.00Down
Testis6 10 of 4 0.10Down
Male accessory glands4 20 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.04Down
Mated spermatheca6 10 of 4 0.07Down
Adult carcass25 22 of 4 0.30Down
Larval CNS803 514 of 4 9.06Up
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut1 00 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 00 of 4 0.04Down
Larval fat body4 10 of 4 0.10Down
Larval trachea28 512 of 4 0.32None
Larval carcass8 10 of 4 0.09Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly88 94 of 4

Looking for FBgn0033876. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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