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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033880 through 18771 annotations produced 1 hits



(CG6553):

Annotation Number : CG6553
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033880
Gbrowse : chr2R:9742241-9743257 (-) // 100.0 //
Probeset : 1636148_at
Accessions : protein= NP_610911;, nucleotide= NM_137067;
FlyMine data for FBgn0033880.
Homophila reports that CG6553 is a close match (1e-11) to human gene BMND1;EVR4;LR3;LRP5;LRP7;OPPG;OPTA1;VBCH2 (NP_002326), a gene associated with Exudative vitreoretinopathy 4, 601813 (3);Hyperostosis, endosteal, 144750 (3);Osteopetrosis, AD type I, 607634 (3);Osteoporosis-pseudoglioma syndrome, 259770 (3);Osteosclerosis, 144750 (3);van Buchem disease, type 2, 607636 (3);[Bone mineral density variability 1], 601884 (3);{Osteoporosis}, 166710 (3).
VDRC has 3 RNAi stocks for FBgn0033880 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.70None
Head29 ± 23 of 4 4.30Up
Eye5 ± 20 of 4 0.84None
Thoracicoabdominal ganglion5 ± 30 of 4 0.80None
Salivary gland3 ± 00 of 4 0.47None
Crop12 ± 10 of 4 1.70None
Midgut4 ± 10 of 4 0.60None
Tubule6 ± 00 of 4 1.00None
Hindgut7 ± 20 of 4 1.00None
Heart39 ± 34 of 4 5.68Up
Fat body9 ± 20 of 4 1.36None
Ovary2 ± 00 of 4 0.40None
Testis5 ± 20 of 4 0.80None
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca7 ± 20 of 4 1.06None
Mated spermatheca7 ± 20 of 4 1.04None
Adult carcass37 ± 42 of 4 5.30Up
Larval CNS2 ± 10 of 4 0.33None
Larval Salivary gland5 ± 20 of 4 0.74None
Larval midgut5 ± 10 of 4 0.73None
Larval tubule5 ± 00 of 4 0.70None
Larval hindgut4 ± 10 of 4 0.62None
Larval fat body4 ± 20 of 4 0.60None
Larval trachea12 ± 44 of 4 1.82None
Larval carcass18 ± 20 of 4 2.72Up
S2 cells (growing)5 ± 10 of 4 0.77None
Whole fly7 ± 20 of 4

Looking for FBgn0033880. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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