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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033886 through 18771 annotations produced 1 hits



(CG13349):

Annotation Number : CG13349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033886
Gbrowse : chr2R:9846032-9847909 (-) // 100.0 //
Probeset : 1629266_s_at
Accessions : protein= NP_001137662; /// NP_001137663; /// NP_001137664; /// NP_610917; /// NP_725346;, nucleotide= NM_001144190; /// NM_001144191; /// NM_001144192; /// NM_137073; /// NM_166025;
Pathway : 0000502 // proteasome complex // inferred from sequence or structural similarity /// 0000502 // proteasome complex // in
Interpro : 0061133 // endopeptidase activator activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033886.
BDGP gene expression has embryonic in situ data for CG13349: 8 pix of staining in 3 body parts.
BioGrid reports that CG13349 interacts with CG15262 CG6789 CG1962 CG3431 CG4027 CG7088 CG7625 .
TRiP has 1 RNAi stocks for FBgn0033886 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033886 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain314 24 of 4 0.50Down
Head366 64 of 4 0.60Down
Eye599 144 of 4 0.93None
Thoracicoabdominal ganglion342 254 of 4 0.50Down
Salivary gland588 524 of 4 0.91None
Crop625 134 of 4 1.00None
Midgut514 104 of 4 0.80Down
Tubule473 304 of 4 0.70Down
Hindgut478 154 of 4 0.70Down
Heart1298 614 of 4 2.01Up
Fat body882 654 of 4 1.36Up
Ovary817 144 of 4 1.30Up
Testis839 184 of 4 1.30Up
Male accessory glands483 154 of 4 0.70Down
Virgin spermatheca351 124 of 4 0.54Down
Mated spermatheca342 94 of 4 0.53Down
Adult carcass766 334 of 4 1.20Up
Larval CNS610 294 of 4 0.94None
Larval Salivary gland840 494 of 4 1.30Up
Larval midgut740 984 of 4 1.14None
Larval tubule1578 494 of 4 2.40Up
Larval hindgut809 664 of 4 1.25None
Larval fat body864 574 of 4 1.30Up
Larval trachea783 324 of 4 1.21Up
Larval carcass1266 1414 of 4 1.96Up
S2 cells (growing)518 54 of 4 0.80Down
Whole fly647 144 of 4

Looking for FBgn0033886. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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