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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033889 through 18771 annotations produced 1 hits



(CG6701):

Annotation Number : CG6701
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033889
Gbrowse : chr2R:9860493-9866564 (-) // 100.0 //
Probeset : 1635737_at
Accessions : protein= NP_610920;, nucleotide= NM_137076;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // infe
FlyMine data for FBgn0033889.
Homophila reports that CG6701 is a close match (7e-16) to human gene CATF1;HMN6;IGHMBP2;SMARD1;SMUBP2 (NP_002171), a gene associated with Neuronopathy, distal hereditary motor, type VI, 604320 (3).
BioGrid reports that CG6701 interacts with CG3978 CG3938 .
TRiP has 2 RNAi stocks for FBgn0033889 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033889 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 34 of 4 0.30Down
Head131 ± 144 of 4 0.60Down
Eye111 ± 84 of 4 0.53Down
Thoracicoabdominal ganglion83 ± 34 of 4 0.40Down
Salivary gland238 ± 154 of 4 1.13None
Crop174 ± 64 of 4 0.80None
Midgut210 ± 54 of 4 1.00None
Tubule97 ± 144 of 4 0.50Down
Hindgut166 ± 44 of 4 0.80None
Heart148 ± 174 of 4 0.70Down
Fat body175 ± 374 of 4 0.83None
Ovary352 ± 134 of 4 1.70Up
Testis431 ± 104 of 4 2.00Up
Male accessory glands178 ± 84 of 4 0.80None
Virgin spermatheca296 ± 254 of 4 1.40Up
Mated spermatheca242 ± 104 of 4 1.14None
Adult carcass141 ± 34 of 4 0.70Down
Larval CNS67 ± 54 of 4 0.32Down
Larval Salivary gland166 ± 24 of 4 0.79None
Larval midgut228 ± 94 of 4 1.08None
Larval tubule279 ± 84 of 4 1.30Up
Larval hindgut179 ± 104 of 4 0.85None
Larval fat body265 ± 154 of 4 1.30None
Larval trachea229 ± 304 of 4 1.08None
Larval carcass189 ± 144 of 4 0.89None
S2 cells (growing)653 ± 154 of 4 3.08Up
Whole fly211 ± 174 of 4

Looking for FBgn0033889. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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